bartongroup/Proteus: Downstream analysis of the MaxQuant output

Proteus is a package for downstream analysis of MaxQuant evidence data in R environment. It provides a variety of tools for peptide and protein aggregation, quality checks, data exploration and visualisation, including interactive analysis utilising Shiny framework. Proteus performs differential expression with limma, offering a robust treatment of missing data, with no need for (random) imputation.

Getting started

Package details

Bioconductor views MassSpectrometry Proteomics
MaintainerMarek Gierlinski <>
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
bartongroup/Proteus documentation built on April 22, 2023, 5:33 a.m.