Proteus is a package for downstream analysis of MaxQuant evidence data in R environment. It provides a variety of tools for peptide and protein aggregation, quality checks, data exploration and visualisation, including interactive analysis utilising Shiny framework. Proteus performs differential expression with limma, offering a robust treatment of missing data, with no need for (random) imputation.
|Bioconductor views||MassSpectrometry Proteomics|
|Maintainer||Marek Gierlinski <[email protected]>|
|Package repository||View on GitHub|
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