bartongroup/Proteus: Downstream analysis of the MaxQuant output

Proteus is a package for downstream analysis of MaxQuant evidence data in R environment. It provides a variety of tools for peptide and protein aggregation, quality checks, data exploration and visualisation, including interactive analysis utilising Shiny framework. Proteus performs differential expression with limma, offering a robust treatment of missing data, with no need for (random) imputation.

Getting started

Package details

Bioconductor views MassSpectrometry Proteomics
MaintainerMarek Gierlinski <[email protected]>
LicenseGPL-2
Version0.2.13
URL https://github.com/bartongroup/Proteus
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("bartongroup/Proteus")
bartongroup/Proteus documentation built on June 21, 2019, 10:43 a.m.