API for bartongroup/Proteus
Downstream analysis of the MaxQuant output

Global functions
RAS Man page Source code
aggregateHifly Man page Source code
aggregateMedian Man page Source code
aggregateSum Man page Source code
allProteinTable Man page Source code
allowedUniProtColumns Man page
annotateProteins Man page Source code
evidenceColumns Man page
fetchFromUniProt Man page Source code
goodData Man page Source code
intensityStats Man page Source code
jaccardSimilarity Man page Source code
jitterPlot Man page Source code
limmaDE Man page Source code
limmaRatioDE Man page Source code
makePeptideTable Man page Source code
makeProteinTable Man page Source code
measureColumns Man page
normalizeData Man page Source code
normalizeMedian Man page Source code
normalizeTMT Man page Source code
parameterString Man page Source code
plotClustering Man page Source code
plotCount Man page Source code
plotDetectionSimilarity Man page Source code
plotDistanceMatrix Man page Source code
plotFID Man page Source code
plotFID_live Man page Source code
plotIntensities Man page Source code
plotMV Man page Source code
plotPCA Man page Source code
plotPdist Man page Source code
plotProtPeptides Man page Source code
plotSampleDistributions Man page Source code
plotVolcano Man page Source code
plotVolcano_live Man page Source code
proteinColumns Man page
proteinInfo Man page Source code
proteusData Man page Source code
readColumnNames Man page Source code
readEvidenceFile Man page Source code
readProteinGroups Man page Source code
replicateTable Man page Source code
selectProtein Source code
significanceTable Man page Source code
summary.proteusData Man page Source code
tryQuery Man page Source code
bartongroup/Proteus documentation built on June 21, 2020, 9:45 a.m.