API for bartongroup/Proteus
Downstream analysis of the MaxQuant output

Global functions
RAS	Man page Source code
aggregateHifly	Man page Source code
aggregateMedian	Man page Source code
aggregateSum	Man page Source code
allProteinTable	Man page Source code
allowedUniProtColumns	Man page
annotateProteins	Man page Source code
evidenceColumns	Man page
fetchFromUniProt	Man page Source code
goodData	Man page Source code
intensityStats	Man page Source code
jaccardSimilarity	Man page Source code
jitterPlot	Man page Source code
limmaDE	Man page Source code
limmaRatioDE	Man page Source code
makePeptideTable	Man page Source code
makeProteinTable	Man page Source code
measureColumns	Man page
normalizeData	Man page Source code
normalizeMedian	Man page Source code
normalizeTMT	Man page Source code
parameterString	Man page Source code
plotClustering	Man page Source code
plotCount	Man page Source code
plotDetectionSimilarity	Man page Source code
plotDistanceMatrix	Man page Source code
plotFID	Man page Source code
plotFID_live	Man page Source code
plotIntensities	Man page Source code
plotMV	Man page Source code
plotPCA	Man page Source code
plotPdist	Man page Source code
plotProtPeptides	Man page Source code
plotSampleDistributions	Man page Source code
plotVolcano	Man page Source code
plotVolcano_live	Man page Source code
proteinColumns	Man page
proteinInfo	Man page Source code
proteusData	Man page Source code
readColumnNames	Man page Source code
readEvidenceFile	Man page Source code
readProteinGroups	Man page Source code
replicateTable	Man page Source code
selectProtein	Source code
significanceTable	Man page Source code
summary.proteusData	Man page Source code
tryQuery	Man page Source code