plotDetectionSimilarity | R Documentation |
plotDetectionSimilarit
plots a distribution of (peptide) detection
similarities between samples. Jaccard similarity between two sets is defined
as the size of the intersection divided by the size of the union. This plot
can be used to assess quality of data.
plotDetectionSimilarity(
pdat,
bin.size = 0.01,
text.size = 12,
plot.grid = TRUE,
hist.colour = "grey30"
)
pdat |
A |
bin.size |
Bin size for the histogram. |
text.size |
Text size. |
plot.grid |
Logical to plot grid. |
hist.colour |
Colour of the histogram. |
A ggplot
object.
library(proteusLabelFree)
data(proteusLabelFree)
plotDetectionSimilarity(pepdat)
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