plotDistanceMatrix: Plot distance matrix
In bartongroup/Proteus: Downstream analysis of the MaxQuant output
plotDistanceMatrix R Documentation
Plot distance matrix
Description
plotDistanceMatrix plots a distance matrix for peptide or protein
data.
Usage
plotDistanceMatrix(pdat, distance = c("correlation"), text.size = 10)
Arguments
pdat
Peptide or protein proteusData object.
distance
A method to calculate distance.
text.size
Text size on axes
Details
Computes a distance matrix and plots it as a shade-plot. The default distance
is Pearson's correlation coefficient. Other methods will be introduced later.
Value
A ggplot object.
Examples
library(proteusLabelFree)
data(proteusLabelFree)
plotDistanceMatrix(pepdat)
bartongroup/Proteus documentation built on April 22, 2023, 5:33 a.m.
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| plotDistanceMatrix | R Documentation |
Plot distance matrix
Description
plotDistanceMatrix plots a distance matrix for peptide or protein
data.
Usage
plotDistanceMatrix(pdat, distance = c("correlation"), text.size = 10)
Arguments
pdat |
Peptide or protein |
distance |
A method to calculate distance. |
text.size |
Text size on axes |
Details
Computes a distance matrix and plots it as a shade-plot. The default distance is Pearson's correlation coefficient. Other methods will be introduced later.
Value
A ggplot object.
Examples
library(proteusLabelFree)
data(proteusLabelFree)
plotDistanceMatrix(pepdat)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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