plotFID_live: Fold-change intensity diagram in live Shiny session

In bartongroup/Proteus: Downstream analysis of the MaxQuant output

Fold-change intensity diagram in live Shiny session

Description

plotFID_live makes a log10 fold change versus log10 sum intensity plot, usually known as MA plot.

Usage

plotFID_live(pdat, res, max_points = 100)

Arguments

pdat	Protein proteusData object.
res	Result table from limmaDE.
max_points	Maximum number of points that can be selected.

Value

A shiny session hosted locally.

Examples

library(shiny)
library(proteusLabelFree)
data(proteusLabelFree)
prodat.med <- normalizeData(prodat)
res <- limmaDE(prodat.med,sig.level = 0.05)
## Not run: 
plotFID_live(prodat.med, res)

## End(Not run)

bartongroup/Proteus documentation built on April 22, 2023, 5:33 a.m.