plotPCA: Plot PCA

In bartongroup/Proteus: Downstream analysis of the MaxQuant output

Plot PCA

Description

plotPCA creates a principal analysis plot using first two components.

Usage

plotPCA(
  pdat,
  with.legend = TRUE,
  point.size = 1.2,
  text.size = 10,
  label.size = 3,
  legend.text.size = 7,
  palette = cbPalette
)

Arguments

pdat	Peptide or protein proteusData object.
with.legend	Logical, whether to plot a legend.
point.size	Size of the point in the plot.
text.size	Size of the axis text.
label.size	Size of the text labels identifying sapmles.
legend.text.size	Size of the legend text.
palette	Palette of colours

Value

Creates a plot

Examples

library(proteusLabelFree)
data(proteusLabelFree)
plotPCA(pepdat)

bartongroup/Proteus documentation built on April 22, 2023, 5:33 a.m.