Files in bartongroup/Proteus

Downstream analysis of the MaxQuant output

R/func.R R/live.R R/uniprot.R README.md man/RAS.Rd man/aggregateHifly.Rd man/aggregateMedian.Rd man/aggregateSum.Rd man/allProteinTable.Rd man/allowedUniProtColumns.Rd man/annotateProteins.Rd man/evidenceColumns.Rd man/fetchFromUniProt.Rd man/goodData.Rd man/intensityStats.Rd man/jaccardSimilarity.Rd man/jitterPlot.Rd man/limmaDE.Rd man/limmaRatioDE.Rd man/makePeptideTable.Rd man/makeProteinTable.Rd man/measureColumns.Rd man/normalizeData.Rd man/normalizeMedian.Rd man/normalizeTMT.Rd man/parameterString.Rd man/plotClustering.Rd man/plotCount.Rd man/plotDetectionSimilarity.Rd man/plotDistanceMatrix.Rd man/plotFID.Rd man/plotFID_live.Rd man/plotIntensities.Rd man/plotMV.Rd man/plotPCA.Rd man/plotPdist.Rd man/plotProtPeptides.Rd man/plotSampleDistributions.Rd man/plotVolcano.Rd man/plotVolcano_live.Rd man/proteinColumns.Rd man/proteinInfo.Rd man/proteusData.Rd man/readColumnNames.Rd man/readEvidenceFile.Rd man/readProteinGroups.Rd man/replicateTable.Rd man/significanceTable.Rd man/summary.proteusData.Rd man/tryQuery.Rd tests/testthat.R tests/testthat/test_jaccardSimilarity.R tests/testthat/test_makePeptideTable.R tests/testthat/test_makeProtein.R vignettes/SILAC.Rmd vignettes/TMT.Rmd vignettes/proteus.Rmd