PAGEEnrich: runPAGEEnrich

In bernard2012/Giotto: Spatial single-cell transcriptomics toolbox

Description

Function to calculate gene signature enrichment scores per spatial position using PAGE.

Usage

PAGEEnrich(...)

Arguments

...

Arguments passed on to runPAGEEnrich gobject Giotto object sign_matrix Matrix of signature genes for each cell type / process expression_values expression values to use reverse_log_scale reverse expression values from log scale logbase log base to use if reverse_log_scale = TRUE output_enrichment how to return enrichment output p_value calculate p-values (boolean, default = FALSE) n_times number of permutations to calculate for p_value name to give to spatial enrichment results, default = PAGE return_gobject return giotto object

See Also

runPAGEEnrich

bernard2012/Giotto documentation built on Sept. 22, 2020, 10:29 a.m.