combCCcom: combCCcom

In bernard2012/Giotto: Spatial single-cell transcriptomics toolbox

Description

Combine spatial and expression based cell-cell communication data.tables

Usage

combCCcom(
  spatialCC,
  exprCC,
  min_lig_nr = 3,
  min_rec_nr = 3,
  min_padj_value = 1,
  min_log2fc = 0,
  min_av_diff = 0,
  detailed = FALSE
)

Arguments

spatialCC	spatial cell-cell communication scores
exprCC	expression cell-cell communication scores
min_lig_nr	minimum number of ligand cells
min_rec_nr	minimum number of receptor cells
min_padj_value	minimum adjusted p-value
min_log2fc	minimum log2 fold-change
min_av_diff	minimum average expression difference
detailed	detailed option used with spatCellCellCom (default = FALSE)

Value

combined data.table with spatial and expression communication data

Examples

    combCCcom(gobject)

bernard2012/Giotto documentation built on Sept. 22, 2020, 10:29 a.m.