createGiottoImage: createGiottoImage

In bernard2012/Giotto: Spatial single-cell transcriptomics toolbox

Description

Creates a giotto image that can be added to a Giotto object and/or used to add an image to the spatial plotting functions

Usage

createGiottoImage(
  gobject = NULL,
  spatial_locs = NULL,
  mg_object,
  name = "image",
  xmax_adj = 0,
  xmin_adj = 0,
  ymax_adj = 0,
  ymin_adj = 0
)

Arguments

gobject	giotto object
spatial_locs	spatial locations (alternative if giobject = NULL)
mg_object	magick image object
name	name for the image
xmax_adj	adjustment of the maximum x-value to align the image
xmin_adj	adjustment of the minimum x-value to align the image
ymax_adj	adjustment of the maximum y-value to align the image
ymin_adj	adjustment of the minimum y-value to align the image

Value

a giotto image object

Examples

    createGiottoImage(mg_object)

bernard2012/Giotto documentation built on Sept. 22, 2020, 10:29 a.m.