crossSectionGenePlot: crossSectionGenePlot

In bernard2012/Giotto: Spatial single-cell transcriptomics toolbox

Description

Visualize cells and gene expression in a virtual cross section according to spatial coordinates

Usage

crossSectionGenePlot(
  gobject = NULL,
  crossSection_obj = NULL,
  name = NULL,
  spatial_network_name = "Delaunay_network",
  default_save_name = "crossSectionGenePlot",
  ...
)

Arguments

gobject	giotto object
crossSection_obj	crossSection object
name	name of virtual cross section to use
spatial_network_name	name of spatial network to use
default_save_name	default save name for saving, don't change, change save_name in save_param
...	parameters for spatGenePlot2D

Details

Description of parameters.

Value

ggplot

See Also

spatGenePlot3D and spatGenePlot2D

bernard2012/Giotto documentation built on Sept. 22, 2020, 10:29 a.m.