crossSectionGenePlot3D: crossSectionGenePlot3D

In bernard2012/Giotto: Spatial single-cell transcriptomics toolbox

Description

Visualize cells and gene expression in a virtual cross section according to spatial coordinates

Usage

crossSectionGenePlot3D(
  gobject,
  crossSection_obj = NULL,
  name = NULL,
  spatial_network_name = "Delaunay_network",
  other_cell_color = alpha("lightgrey", 0),
  default_save_name = "crossSectionGenePlot3D",
  ...
)

Arguments

gobject	giotto object
crossSection_obj	cross section object as alternative input. default = NULL.
name	name of virtual cross section to use
spatial_network_name	name of spatial network to use
other_cell_color	color of cells outside the cross section. default = transparent.
default_save_name	default save name for saving, don't change, change save_name in save_param
...	parameters for spatGenePlot3D

Details

Description of parameters.

Value

ggplot

Examples

    crossSectionGenePlot3D(gobject)

bernard2012/Giotto documentation built on Sept. 22, 2020, 10:29 a.m.