makeSignMatrixRank: makeSignMatrixRank

In bernard2012/Giotto: Spatial single-cell transcriptomics toolbox

Description

Function to convert a single-cell count matrix and a corresponding single-cell cluster vector into a rank matrix that can be used with the Rank enrichment option.

Usage

makeSignMatrixRank(sc_matrix, sc_cluster_ids, gobject = NULL)

Arguments

sc_matrix	matrix of single-cell RNAseq expression data
sc_cluster_ids	vector of cluster ids
gobject	if giotto object is given then only genes present in both datasets will be considered

Value

matrix

See Also

rankEnrich

Examples

    makeSignMatrixRank()

bernard2012/Giotto documentation built on Sept. 22, 2020, 10:29 a.m.