subsetGiotto: subsetGiotto

In bernard2012/Giotto: Spatial single-cell transcriptomics toolbox

Description

subsets Giotto object including previous analyses.

Usage

subsetGiotto(gobject, cell_ids = NULL, gene_ids = NULL, verbose = FALSE)

Arguments

gobject	giotto object
cell_ids	cell IDs to keep
gene_ids	gene IDs to keep
verbose	be verbose

Value

giotto object

Examples

data(mini_giotto_single_cell)

random_cells = sample(slot(mini_giotto_single_cell, 'cell_ID'), 10)
random_genes = sample(slot(mini_giotto_single_cell, 'gene_ID'), 10)

subset_obj = subsetGiotto(mini_giotto_single_cell,
                         cell_ids = random_cells,
                         gene_ids = random_genes)

bernard2012/Giotto documentation built on Sept. 22, 2020, 10:29 a.m.