Files in bhklab/genefu
Computation of Gene Expression-Based Signatures in Breast Cancer
.Rinstignore
.github/.gitignore
.github/ISSUE_TEMPLATE/bug-report--question-or-feature-request.md
.github/ISSUE_TEMPLATE/bug_report.md
.github/ISSUE_TEMPLATE/feature_request.md
.github/workflows/R-CMD-check.yaml
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md
R/SpearmanCI.R
R/bimod.R
R/boxplotplus2.R
R/claudinLow.R
R/collapseIDs.R
R/compare.proto.cor.R
R/compute.pairw.cor.meta.R
R/compute.pairw.cor.z.R
R/compute.proto.cor.meta.R
R/cordiff.dep.R
R/data.R
R/endoPredict.R
R/fuzzy.ttest.R
R/gene70.R
R/gene76.R
R/geneid.map.R
R/genius.R
R/ggi.R
R/globals.R
R/ihc4.R
R/intrinsic.cluster.R
R/intrinsic.cluster.predict.R
R/map.datasets.R
R/medianCtr.R
R/molecular.subtyping.R
R/npi.R
R/oncotypedx.R
R/ovcAngiogenic.R
R/ovcCrijns.R
R/ovcSigs.R
R/ovcTCGA.R
R/ovcYoshihara.R
R/overlapSets.R
R/package.R
R/pik3cags.R
R/power.cor.R
R/ps.cluster.R
R/read.m.file.R
R/readArray.R
R/rename.duplicate.R
R/rescale.R
R/rorS.R
R/setcolclass.df.R
R/sig.score.R
R/st.gallen.R
R/stab.fs.R
R/stab.fs.ranking.R
R/strescR.R
R/subtype.cluster.R
R/subtype.cluster.predict.R
R/tamr13.R
R/tbrm.R
R/weighted.meanvar.R
R/write.m.file.R
README.md
data/claudinLowData.rda
data/expos.rda
data/mod1.rda
data/mod2.rda
data/modelOvcAngiogenic.rda
data/nkis.rda
data/pam50.rda
data/pam50.robust.rda
data/pam50.scale.rda
data/scmgene.robust.rda
data/scmod1.robust.rda
data/scmod2.robust.rda
data/sig.endoPredict.rda
data/sig.gene70.rda
data/sig.gene76.rda
data/sig.genius.rda
data/sig.ggi.rda
data/sig.oncotypedx.rda
data/sig.pik3cags.rda
data/sig.tamr13.rda
data/sigOvcAngiogenic.rda
data/sigOvcCrijns.rda
data/sigOvcSpentzos.rda
data/sigOvcTCGA.rda
data/sigOvcYoshihara.rda
data/ssp2003.rda
data/ssp2003.robust.rda
data/ssp2003.scale.rda
data/ssp2006.rda
data/ssp2006.robust.rda
data/ssp2006.scale.rda
data/vdxs.rda
inst/extdata/T.E.9CELL-LINE.txt
inst/extdata/bentink2012_angiogenic.csv
inst/extdata/crijns2009_sig.csv
inst/extdata/desmedt2008_genemodules.csv
inst/extdata/filipits2011_sig_endopredict.csv
inst/extdata/haibekains2009_sig_genius.csv
inst/extdata/loi2008_tamr13.csv
inst/extdata/loi2010_pik3cags.csv
inst/extdata/paik2004_sig_oncotypedx.csv
inst/extdata/pam50_model.csv
inst/extdata/scmgene_robust_model.csv
inst/extdata/scmod1_robust_model.csv
inst/extdata/scmod2_robust_model.csv
inst/extdata/sotiriou2006_sig_ggi.csv
inst/extdata/spentzos2011_sig.csv
inst/extdata/ssp2003_model.csv
inst/extdata/ssp2006_model.csv
inst/extdata/tcga2011_sig.csv
inst/extdata/veer2002_sig_gene70.csv
inst/extdata/wang2005_sig_gene76.csv
inst/extdata/wirapati2008_genemodules.csv
inst/extdata/yoshihara2010_sig.csv
man/bimod.Rd
man/boxplotplus2.Rd
man/claudinLow.Rd
man/claudinLowData.Rd
man/collapseIDs.Rd
man/compareProtoCor.Rd
man/compute.pairw.cor.meta.Rd
man/compute.pairw.cor.z.Rd
man/compute.proto.cor.meta.Rd
man/cordiff.dep.Rd
man/endoPredict.Rd
man/expos.Rd
man/fuzzy.ttest.Rd
man/gene70.Rd
man/gene76.Rd
man/genefu-package.Rd
man/geneid.map.Rd
man/genius.Rd
man/ggi.Rd
man/ihc4.Rd
man/intrinsic.cluster.Rd
man/intrinsic.cluster.predict.Rd
man/map.datasets.Rd
man/medianCtr.Rd
man/mod1.Rd
man/mod2.Rd
man/modelOvcAngiogenic.Rd
man/molecular.subtyping.Rd
man/nkis.Rd
man/npi.Rd
man/oncotypedx.Rd
man/ovcAngiogenic.Rd
man/ovcCrijns.Rd
man/ovcTCGA.Rd
man/ovcYoshihara.Rd
man/overlapSets.Rd
man/pam50.Rd
man/pik3cags.Rd
man/power.cor.Rd
man/ps.cluster.Rd
man/read.m.file.Rd
man/readArray.Rd
man/rename.duplicate.Rd
man/rescale.Rd
man/rorS.Rd
man/scmgene.robust.Rd
man/scmod1.robust.Rd
man/scmod2.robust.Rd
man/setcolclass.df.Rd
man/sig.endoPredict.Rd
man/sig.gene70.Rd
man/sig.gene76.Rd
man/sig.genius.Rd
man/sig.ggi.Rd
man/sig.oncotypedx.Rd
man/sig.pik3cags.Rd
man/sig.score.Rd
man/sig.tamr13.Rd
man/sigOvcAngiogenic.Rd
man/sigOvcCrijns.Rd
man/sigOvcSpentzos.Rd
man/sigOvcTCGA.Rd
man/sigOvcYoshihara.Rd
man/spearmanCI.Rd
man/ssp2003.Rd
man/ssp2006.Rd
man/st.gallen.Rd
man/stab.fs.Rd
man/stab.fs.ranking.Rd
man/strescR.Rd
man/subtype.cluster.Rd
man/subtype.cluster.predict.Rd
man/tamr13.Rd
man/tbrm.Rd
man/vdxs.Rd
man/weighted.meanvar.Rd
man/write.m.file.Rd
vignettes/genefu.R
vignettes/genefu.Rmd
vignettes/genefu.html
