plotCorMatrix: Plot a denoised correlation matrix

In biobenkj/compartmentalizer: Higher-order chromatin domain inference in single samples from methylation arrays and single cells from scRNA-seq and scATAC-seq

Plot a denoised correlation matrix

Description

Plot a denoised correlation matrix

Usage

plotCorMatrix(
  denoised.cor.mat,
  midpoint = 0.3,
  return.plot.obj = FALSE,
  uppertri = FALSE,
  lowertri = FALSE
)

Arguments

denoised.cor.mat	The denoised correlation matrix object from getDenoisedMatrix
midpoint	The midpoint for the coloring (default is 0.3)
return.plot.obj	Whether to return the ggplot object
uppertri	Whether to keep the upper triangle of the matrix
lowertri	Whether to keep the lower triangle of the matrix

Value

Either a ggplot object or plot

Examples

dummy <- matrix(rnorm(10000), ncol=25)
set.seed(1000)
my_plot <- plotCorMatrix(dummy, return.plot.obj = TRUE)

biobenkj/compartmentalizer documentation built on Oct. 13, 2023, 5:26 p.m.