as_seurat: Convert a 'SingleCellExperiment' to 'Seurat' object.

In bioinfocz/scdrake: A pipeline for droplet-based single-cell RNA-seq data secondary analysis implemented in the drake Make-like toolkit for R language

Convert a SingleCellExperiment to Seurat object.

Description

A wrapper around Seurat::as.Seurat().

Usage

as_seurat(sce, sce_assay = NULL, seurat_assay = "RNA", add_rowData = TRUE, ...)

Arguments

sce	A SingleCellExperiment object.
sce_assay	A character scalar: name of assay in sce (e.g. counts or logcounts). Use NULL to convert all assays (default).
seurat_assay	A character scalar: name of assay in the new Seurat object.
add_rowData	A logical scalar: if TRUE, add rowData(sce) to meta.features slot of assay of the new Seurat object.
...	Passed to Seurat::as.Seurat().

Value

A Seurat object.

bioinfocz/scdrake documentation built on Jan. 29, 2024, 10:24 a.m.