contrasts_params: Prepare a 'tibble' with parameters for contrasts tests.

In bioinfocz/scdrake: A pipeline for droplet-based single-cell RNA-seq data secondary analysis implemented in the drake Make-like toolkit for R language

Prepare a tibble with parameters for contrasts tests.

Description

Extract heatmap-related parameters.

Extract plotting-related parameters.

Usage

contrasts_params_fn(contrasts_sources, cell_data)

contrasts_heatmap_params_fn(contrasts_params, contrasts_test_params)

contrasts_plot_params_fn(contrasts_params)

Arguments

contrasts_sources	A named list.
cell_data	A named list: items are columns from colData(). This is used to assign cells to groups or blocks.
contrasts_params	(input target) A tibble.
contrasts_test_params	(input target) A tibble.

Value

A tibble. Output target: contrasts_params

A tibble. Output target: contrasts_heatmap_params

A tibble. Output target: contrasts_plot_params

bioinfocz/scdrake documentation built on Jan. 29, 2024, 10:24 a.m.