calc_sc3: Run SC3 clustering for a specific 'k'.
In bioinfocz/scdrake: A pipeline for droplet-based single-cell RNA-seq data secondary analysis implemented in the drake Make-like toolkit for R language
calc_sc3 R Documentation
Run SC3 clustering for a specific k.
Description
See SC3::sc3() for more details.
Usage
calc_sc3(sce_pca, sc3_k, is_integration, BPPARAM = BiocParallel::SerialParam())
Arguments
sce_pca
A SingleCellExperiment object with calculated PCA.
sc3_k
An integer vector: numbers of clusters for SC3.
is_integration
A logical scalar: if TRUE, clusterings will be named as cluster_int_*, otherwise cluster_*.
BPPARAM
A BiocParallel::BiocParallelParam object.
Details
If is_integration is TRUE, logcounts(sce_pca) will be coerced to matrix.
Value
A SingleCellExperiment object as returned from SC3::sc3().
bioinfocz/scdrake documentation built on Jan. 29, 2024, 10:24 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| calc_sc3 | R Documentation |
Run SC3 clustering for a specific k.
Description
See SC3::sc3() for more details.
Usage
calc_sc3(sce_pca, sc3_k, is_integration, BPPARAM = BiocParallel::SerialParam())
Arguments
sce_pca |
A |
sc3_k |
An integer vector: numbers of clusters for SC3. |
is_integration |
A logical scalar: if |
BPPARAM |
A BiocParallel::BiocParallelParam object. |
Details
If is_integration is TRUE, logcounts(sce_pca) will be coerced to matrix.
Value
A SingleCellExperiment object as returned from SC3::sc3().
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.