cell_data_fn: Merge all cell-related data to a single DataFrame.

In bioinfocz/scdrake: A pipeline for droplet-based single-cell RNA-seq data secondary analysis implemented in the drake Make-like toolkit for R language

Merge all cell-related data to a single DataFrame.

Description

Merge all cell-related data to a single DataFrame.

Usage

cell_data_fn(
  col_data,
  clusters_all,
  cell_annotation_labels,
  cell_groupings,
  additional_cell_data,
  pipeline_type = c("single_sample", "integration")
)

Arguments

col_data	A dataframe.
clusters_all	A named list.
cell_annotation_labels	A named list.
cell_groupings	A dataframe: see make_cell_groupings().
additional_cell_data	A data.frame-like object with additional cell data to be joined.
pipeline_type	A character scalar: If "single_sample", then additional_cell_data must contain Barcode column. If "integration", then additional_cell_data must contain Barcode and batch columns.

Value

A DataFrame object.

bioinfocz/scdrake documentation built on Jan. 29, 2024, 10:24 a.m.