cc_genes_fn: Get dataframe of cell cycle genes.

View source: R/single_sample_norm_clustering.R

cc_genes_fnR Documentation

Get dataframe of cell cycle genes.

Description

This is a wrapper around data bundled in the Seurat package (cc.genes.updated.2019).

Usage

cc_genes_fn(sce_final_input_qc, organism, annotation_db_file)

Arguments

sce_final_input_qc

(input target) A SingleCellExperiment object.

organism

A character scalar: if "mouse", gene symbols will be converted to sentence-case (e.g. "Gapdh").

annotation_db_file

A character scalar: path to AnnotationDbi SQLite file.

Value

A dataframe. Output target: cc_genes


bioinfocz/scdrake documentation built on Sept. 19, 2024, 4:43 p.m.