cc_genes_fn: Get dataframe of cell cycle genes.
In bioinfocz/scdrake: A pipeline for droplet-based single-cell RNA-seq data secondary analysis implemented in the drake Make-like toolkit for R language
View source: R/single_sample_norm_clustering.R
cc_genes_fn R Documentation
Get dataframe of cell cycle genes.
Description
This is a wrapper around data bundled in the Seurat package (cc.genes.updated.2019).
Usage
cc_genes_fn(sce_final_input_qc, organism, annotation_db_file)
Arguments
sce_final_input_qc
(input target) A SingleCellExperiment object.
organism
A character scalar: if "mouse", gene symbols will be converted to sentence-case (e.g. "Gapdh").
annotation_db_file
A character scalar: path to AnnotationDbi SQLite file.
Value
A dataframe. Output target: cc_genes
bioinfocz/scdrake documentation built on Jan. 29, 2024, 10:24 a.m.
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View source: R/single_sample_norm_clustering.R
| cc_genes_fn | R Documentation |
Get dataframe of cell cycle genes.
Description
This is a wrapper around data bundled in the Seurat package (cc.genes.updated.2019).
Usage
cc_genes_fn(sce_final_input_qc, organism, annotation_db_file)
Arguments
sce_final_input_qc |
(input target) A |
organism |
A character scalar: if |
annotation_db_file |
A character scalar: path to |
Value
A dataframe. Output target: cc_genes
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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