create_seu_for_heatmaps: Create a 'Seurat' object used for heatmap generation.
In bioinfocz/scdrake: A pipeline for droplet-based single-cell RNA-seq data secondary analysis implemented in the drake Make-like toolkit for R language
create_seu_for_heatmaps R Documentation
Create a Seurat object used for heatmap generation.
Description
Create a Seurat object used for heatmap generation.
Usage
create_seu_for_heatmaps(sce_dimred, calc_zscore = TRUE)
Arguments
sce_dimred
A SingleCellExperiment object with calculated dimreds.
calc_zscore
A logical scalar: if TRUE, calculate z-scores of UMI counts in assays$RNA@scale.data slot.
Value
A Seurat object.
bioinfocz/scdrake documentation built on Jan. 29, 2024, 10:24 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| create_seu_for_heatmaps | R Documentation |
Create a Seurat object used for heatmap generation.
Description
Create a Seurat object used for heatmap generation.
Usage
create_seu_for_heatmaps(sce_dimred, calc_zscore = TRUE)
Arguments
sce_dimred |
A |
calc_zscore |
A logical scalar: if |
Value
A Seurat object.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.