create_seu_for_heatmaps: Create a 'Seurat' object used for heatmap generation.

View source: R/sce.R

create_seu_for_heatmapsR Documentation

Create a Seurat object used for heatmap generation.

Description

Create a Seurat object used for heatmap generation.

Usage

create_seu_for_heatmaps(sce_dimred, calc_zscore = TRUE)

Arguments

sce_dimred

A SingleCellExperiment object with calculated dimreds.

calc_zscore

A logical scalar: if TRUE, calculate z-scores of UMI counts in assays$RNA@scale.data slot.

Value

A Seurat object.


bioinfocz/scdrake documentation built on Sept. 19, 2024, 4:43 p.m.