ancandtime: Get ancestors and their divergence times
In bomeara/phybase: Basic functions for phylogenetic analysis
Description
Usage
Arguments
Author(s)
Examples
Description
This function returns the ancestors of a node and their divergence times.
Usage
1
ancandtime(inode, nodematrix, nspecies)
Arguments
inode
a node in the tree.
nodematrix
the tree matrix.
nspecies
number of species (taxa) in the tree.
Author(s)
Liang Liu
Examples
1
2
3
4
treestr<-"((((H:0.00402,C:0.00402):0.00304,G:0.00706):0.00929,O:0.01635):0.1,W:0.11635);"
nodematrix<-read.tree.nodes(treestr)$nodes
inode<-6
ancandtime(inode,nodematrix,nspecies=5)
bomeara/phybase documentation built on May 12, 2019, 11:35 p.m.
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Description Usage Arguments Author(s) Examples
Description
This function returns the ancestors of a node and their divergence times.
Usage
1 | ancandtime(inode, nodematrix, nspecies)
|
Arguments
inode |
a node in the tree. |
nodematrix |
the tree matrix. |
nspecies |
number of species (taxa) in the tree. |
Author(s)
Liang Liu
Examples
1 2 3 4 | treestr<-"((((H:0.00402,C:0.00402):0.00304,G:0.00706):0.00929,O:0.01635):0.1,W:0.11635);"
nodematrix<-read.tree.nodes(treestr)$nodes
inode<-6
ancandtime(inode,nodematrix,nspecies=5)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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