pair.dist: Calculate all pairwise distances among taxa in the tree
In bomeara/phybase: Basic functions for phylogenetic analysis
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
Description
The function computes all pairwise distances among taxa in the tree.
Usage
1
pair.dist(nodematrix, nspecies)
Arguments
nodematrix
the tree node matrix
nspecies
the number of taxa in the tree
Value
The function returns a distance matrix.
Author(s)
Liang Liu lliu@uga.edu
See Also
Examples
1
2
3
treestr<-"((((H:0.00402,C:0.00402):0.00304,G:0.00705):0.00929,O:0.01635):0.1,W:0.11635);"
nodematrix<-read.tree.nodes(treestr)$nodes
pair.dist(nodematrix,5)
bomeara/phybase documentation built on May 12, 2019, 11:35 p.m.
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Description Usage Arguments Value Author(s) See Also Examples
Description
The function computes all pairwise distances among taxa in the tree.
Usage
1 | pair.dist(nodematrix, nspecies)
|
Arguments
nodematrix |
the tree node matrix |
nspecies |
the number of taxa in the tree |
Value
The function returns a distance matrix.
Author(s)
Liang Liu lliu@uga.edu
See Also
Examples
1 2 3 | treestr<-"((((H:0.00402,C:0.00402):0.00304,G:0.00705):0.00929,O:0.01635):0.1,W:0.11635);"
nodematrix<-read.tree.nodes(treestr)$nodes
pair.dist(nodematrix,5)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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