mrca.2nodes: Find the most recent common ancestor of two nodes
In bomeara/phybase: Basic functions for phylogenetic analysis
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
Description
The function can find the most recent common ancestor of two nodes inode and jnode
Usage
1
mrca.2nodes(inode, jnode, nodematrix)
Arguments
inode
the node inode
jnode
the node jnode
nodematrix
the tree node matrix
Value
anc
the node number of the most recent common ancestor of inode and jnode.
dist
the distance between the two nodes.
Author(s)
Liang Liu lliu@uga.edu
See Also
Examples
1
2
3
treestr<-"((((H:0.00402,C:0.00402):0.00304,G:0.00707):0.00929,O:0.01635):0.1,W:0.12);"
nodematrix<-read.tree.nodes(treestr)$nodes
mrca.2nodes(1,2,nodematrix)
bomeara/phybase documentation built on May 12, 2019, 11:35 p.m.
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Description Usage Arguments Value Author(s) See Also Examples
Description
The function can find the most recent common ancestor of two nodes inode and jnode
Usage
1 | mrca.2nodes(inode, jnode, nodematrix)
|
Arguments
inode |
the node |
jnode |
the node |
nodematrix |
the tree node matrix |
Value
anc |
the node number of the most recent common ancestor of |
dist |
the distance between the two nodes. |
Author(s)
Liang Liu lliu@uga.edu
See Also
Examples
1 2 3 | treestr<-"((((H:0.00402,C:0.00402):0.00304,G:0.00707):0.00929,O:0.01635):0.1,W:0.12);"
nodematrix<-read.tree.nodes(treestr)$nodes
mrca.2nodes(1,2,nodematrix)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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