consense: Consensus tree
In bomeara/phybase: Basic functions for phylogenetic analysis

Description Usage Arguments Value Author(s) See Also Examples

The function returns a consensus tree from multiple gene trees.

1	consense(treestr, name,type="freq")

`treestr`	a vector of tree strings
`name`	the species names
`type`	if type="freq", the frequency of each clade in the consensus tree is presented at the node of the clade. if type="prop", the proportion of each clade is presented at the node of the clade"

The function returns the consensus tree and species names.

Liang Liu lliu@uga.edu

maxtree, partition.tree

treestr<-c("((((H:0.00402,C:0.00402):0.00304,G:0.00707):0.00929,O:0.01635):0.1,W:0.12);",
"((((H:0.00402,G:0.00402):0.00304,C:0.00707):0.00929,O:0.01635):0.1,W:0.12);",
"((((H:0.00402,C:0.00402):0.00304,G:0.00707):0.00929,O:0.01635):0.1,W:0.12);")
name<-species.name(treestr[1])
consense(treestr,name)


###unrooted trees
data(unrooted.tree)
name<-paste("S",1:29,sep="")
consense(unrooted.tree,name)