genetree.vector: Construct gene tree vectors from multiple loci
In bomeara/phybase: Basic functions for phylogenetic analysis
Description
Usage
Arguments
Value
Author(s)
References
See Also
Description
This function constructs gene tree vectors from gene trees across loci. The gene tree vectors can be used to construct maximum tree by the function maxtree.
Usage
1
genetree.vector(filenames,outputfile)
Arguments
filenames
the gene tree files
outputfile
the output file
Value
The function returns a matrix of gene trees. Each row represents a gene tree vector. The gene tree vector consists of trees from multiple gene tree files.
Author(s)
Liang Liu lliu@uga.edu
References
Liu, L. and D.K. Pearl. Species trees from gene trees: reconstructing Bayesian posterior distributions of a species phylogeny using estimated gene tree distributions. Systematic Biology, 2007, 56:504-514.
Edwards, S.V., L. Liu., and D.K. Pearl. High resolution species trees without concatenation. PNAS, 2007, 104:5936-5941.
See Also
bomeara/phybase documentation built on May 12, 2019, 11:35 p.m.
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Description Usage Arguments Value Author(s) References See Also
Description
This function constructs gene tree vectors from gene trees across loci. The gene tree vectors can be used to construct maximum tree by the function maxtree.
Usage
1 | genetree.vector(filenames,outputfile)
|
Arguments
filenames |
the gene tree files |
outputfile |
the output file |
Value
The function returns a matrix of gene trees. Each row represents a gene tree vector. The gene tree vector consists of trees from multiple gene tree files.
Author(s)
Liang Liu lliu@uga.edu
References
Liu, L. and D.K. Pearl. Species trees from gene trees: reconstructing Bayesian posterior distributions of a species phylogeny using estimated gene tree distributions. Systematic Biology, 2007, 56:504-514.
Edwards, S.V., L. Liu., and D.K. Pearl. High resolution species trees without concatenation. PNAS, 2007, 104:5936-5941.
See Also
R Package Documentation
Browse R Packages
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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