mrca.nodes: Find the most recent common ancestor of multiple nodes
In bomeara/phybase: Basic functions for phylogenetic analysis
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
Description
The function can find the most recent common ancestor of multiple nodes specified in nodevector
Usage
1
mrca.nodes(nodevector, nodematrix)
Arguments
nodevector
a set of nodes
nodematrix
the tree node matrix
Value
The function returns the node number of the most recent common ancestor of the nodes in nodevector.
Author(s)
Liang Liu lliu@uga.edu
See Also
mrca.2nodes, coaltime, popsize
Examples
1
2
3
treestr<-"((((H:0.00402,C:0.00402):0.00304,G:0.00707):0.00929,O:0.01635):0.1,W:0.12);"
nodematrix<-read.tree.nodes(treestr)$nodes
mrca.nodes(c(1,2,3),nodematrix)
bomeara/phybase documentation built on May 12, 2019, 11:35 p.m.
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Description Usage Arguments Value Author(s) See Also Examples
Description
The function can find the most recent common ancestor of multiple nodes specified in nodevector
Usage
1 | mrca.nodes(nodevector, nodematrix)
|
Arguments
nodevector |
a set of nodes |
nodematrix |
the tree node matrix |
Value
The function returns the node number of the most recent common ancestor of the nodes in nodevector.
Author(s)
Liang Liu lliu@uga.edu
See Also
mrca.2nodes, coaltime, popsize
Examples
1 2 3 | treestr<-"((((H:0.00402,C:0.00402):0.00304,G:0.00707):0.00929,O:0.01635):0.1,W:0.12);"
nodematrix<-read.tree.nodes(treestr)$nodes
mrca.nodes(c(1,2,3),nodematrix)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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