phybase2phylo: Convert between phybase's modified newick and ape phylo
In bomeara/phybase: Basic functions for phylogenetic analysis
Description
Usage
Arguments
Value
Author(s)
Examples
Description
This function converts a newick-like description used by phybase into a phylo object. Most phybase trees convert already, but those with population size information would not. Note that this deletes population size info.
Usage
1
phybase2phylo(x)
Arguments
x
a newick-like phybase description
Value
An ape phylo object
Author(s)
Brian O'Meara omeara.brian@gmail.com
Examples
1
2
tree <- "(((H:0.004#0.01,C:0.004#0.01):0.003#0.01,G:0.01#0.01):0.009#0.01,O:0.02#0.01)#0.01;"
phy <- phybase2phylo(tree)
bomeara/phybase documentation built on May 12, 2019, 11:35 p.m.
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Description Usage Arguments Value Author(s) Examples
Description
This function converts a newick-like description used by phybase into a phylo object. Most phybase trees convert already, but those with population size information would not. Note that this deletes population size info.
Usage
1 | phybase2phylo(x)
|
Arguments
x |
a newick-like phybase description |
Value
An ape phylo object
Author(s)
Brian O'Meara omeara.brian@gmail.com
Examples
1 2 | tree <- "(((H:0.004#0.01,C:0.004#0.01):0.003#0.01,G:0.01#0.01):0.009#0.01,O:0.02#0.01)#0.01;"
phy <- phybase2phylo(tree)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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