name2node: Replace species names by their node numbers

In bomeara/phybase: Basic functions for phylogenetic analysis

Description

This function replaces the species names in the tree string with their node numbers.

Usage

name2node(treestr,name="")

Arguments

treestr	the tree string
name	the species names

Details

If species names are not given, the function will use the sorted species names in the tree string.

Value

The function returns the tree string with the species names replaced by the node numbers.

Author(s)

Liang Liu [e-mail]

See Also

subtree.length, node2name

Examples

treestr<-"(((H:4.2,C:4.2):3.1,G:7.3):6.3,O:13.5);"
name<-c("H","G", "C", "O")
name2node(treestr,name)

bomeara/phybase documentation built on May 12, 2019, 11:35 p.m.