treedist: Distance between two trees

Description Usage Arguments Value Author(s) See Also Examples

Description

This function calculates the distance between two trees.

Usage

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treedist(tree1,tree2)

Arguments

tree1

the first tree node matrix

tree2

the second tree node matrix

Value

The function returns the RF distance of two trees.

Author(s)

Liang Liu lliu@uga.edu

See Also

pair.dist, partition.tree

Examples

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treestr1<-"((((H:0.00402,C:0.00402):0.00304,G:0.00706):0.00929,O:0.01635):0.1,W:0.11635);"
treestr2<-"((((H:0.00402,G:0.00402):0.00304,C:0.00706):0.00929,O:0.01635):0.1,W:0.11635);"
name<-species.name(treestr1)
nodematrix1<-read.tree.nodes(treestr1,name)$nodes
nodematrix2<-read.tree.nodes(treestr2,name)$nodes
treedist(nodematrix1,nodematrix2)

bomeara/phybase documentation built on May 12, 2019, 11:35 p.m.