brendanf/inferrnal: Interface to Call Programs from Infernal RNA Covariance Model Package
Search for matches to a covariance model in RNA sequences, or align RNA sequences to a covariance model. Covariance models use a combination of primary structure (nucleotide sequence) and secondary structure (base pairing) to model non-protein-coding RNA families. This package is a thin wrapper around the Infernal package, which is not included and needs to be installed independently. Functions to read, write, and manipulate multiple sequence alignments in Stockholm format are also included.
Getting started
Browse package contents
Package details |
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| Bioconductor views | Alignment Annotation DNASeq HiddenMarkovModel Metagenomics MultipleSequenceAlignment RNASeq SequenceMatching ThirdPartyClient |
| Maintainer | |
| License | MIT + file LICENSE |
| Version | 0.99.9 |
| URL | https://github.com/brendanf/inferrnal |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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