#' updateExperimentSampleData - Update experiment sample assay data.
#'
#' \code{updateExperimentSampleData} Update experiment sample assay data.
#'
#' @param coreApi coreApi object with valid jsessionid
#' @param assayType entity type to get as character string
#' @param experimentSamplebarcode User provided barcode as a character string
#' @param assayAttributeValues assay attributes as a list of key-values pairs
#' @param useVerbose Use verbose communication for debugging
#' @export
#' @return RETURN returns a list $entity contains entity information,
#' $response contains the entire http response
#' @examples
#'\dontrun{
#' api<-CoreAPI("PATH TO JSON FILE")
#' login<- CoreAPIV2::authBasic(api)
#' response<-CoreAPIV2::updateExperimentSampleData(login$coreApi,assayType,
#' experimentSampleBarcode,assayAtributeValues)
#' updatedEntity <- response$entity
#' CoreAPIV2::logOut(login$coreApi ) response<- CoreAPI::authBasic(coreApi)
#' }
#'@author Craig Parman ngsAnalytics, ngsanalytics.com
#'@description \code{updateExperimentSampleData} Update experiment sample assay data.
updateExperimentSampleData <-
function (coreApi,
assayType,
experimentSamplebarcode,
assayAttributeValues,
useVerbose = FALSE)
{
#Clean Names of assay
assayType <- CoreAPIV2::ODATAcleanName(assayType)
#Clean Names of attributes
for (i in 1:length(names(assayAttributeValues)))
{
names(assayAttributeValues)[i] <-
CoreAPIV2::attributeCleanName(names(assayAttributeValues)[i])
}
body <- assayAttributeValues #needs to be unboxed
resource <- paste0(assayType, "_DATA")
query <- paste0("('", experimentSamplebarcode, "')")
header <- c("Content-Type" = "application/json", "If-Match" = "*")
response <-
CoreAPIV2::apiPUT(
coreApi,
resource = resource,
query = query,
body = body,
encode = "raw",
headers = header,
useVerbose = useVerbose
)
list(entity = httr::content(response), response = response)
}
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