#' updateExperimentSampleRawData - Update experiment sample raw data.
#'
#' \code{updateExperimentSampleRawData} Update experiment sample raw data.
#'
#' @param coreApi coreApi object with valid jsessionid
#' @param experimentContainerBarcode User provided barcode as a character string
#' @param cellNum cell (well) number of container
#' @param values assay attributes as a list of key-values pairs
#' @param useVerbose Use verbose communication for debugging
#' @export
#' @return RETURN returns a list $entity contains entity information,
#' $response contains the entire http response
#' @examples
#'\dontrun{
#' api<-CoreAPI("PATH TO JSON FILE")
#' login<- CoreAPIV2::authBasic(api)
#' response<-updateExperimentSampleRawData(login$coreApi,"contBarcode",cellNum=1,
#' values = list(DATA_VALUE = 100 ,CI_ACCEPT = FALSE)
#'
#' updatedEntity <- response$entity
#' CoreAPIV2::logOut(login$coreApi ) response<- CoreAPI::authBasic(coreApi)
#' }
#'@author Craig Parman ngsAnalytics, ngsanalytics.com
#'@description \code{updateExperimentSampleRawData} Update experiment sample assay raw data.
updateExperimentSampleRawData <-
function (coreApi,
experimentContainerBarcode,
cellNum,
values,
useVerbose = FALSE)
{
#get the current values
resource <- "RAW_DATA"
query <- paste0(
"?$filter=CI_CELL%20eq%20",
as.integer(cellNum),
"%20and%20EXPERIMENT_CONTAINER/Name%20eq%20'",
experimentContainerBarcode,
"'"
)
header <- c(Accept = "application/json")
response <-
CoreAPIV2::apiGET(
coreApi,
resource = resource,
query = query,
headers = header,
useVerbose = useVerbose
)
body <- response$content[[1]]
for (i in 1:length(values))
{
eval(parse(text=
paste0("body$",names(values)[i],
"<-",values[i])
))
}
resource <- paste0("RAW_DATA")
query <- paste0("(", body$Id, ")")
header <- c("Content-Type" = "application/json", "If-Match" = "*")
response <-
CoreAPIV2::apiPUT(
coreApi,
resource = resource,
query = query,
body = body,
encode = "raw",
headers = header,
useVerbose = useVerbose
)
list(entity = httr::content(response), response = response)
}
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