MutPatParseVCFObj: MutPatParseVCFObj
In cgab-ncc/FIREVAT: FIREVAT, FInding REliable Variants without ArTifacts
View source: R/firevat_mutational_patterns.R
MutPatParseVCFObj R Documentation
MutPatParseVCFObj
Description
Parses a vcf.obj and prepares it to run Mutational Patterns.
Usage
MutPatParseVCFObj(vcf.obj, bsg, sample.id = "sample")
Arguments
vcf.obj
A list from ReadVCF
bsg
A BSgenome object
sample.id
A string value
Value
A data.frame with the column sample.id and
row names corresponding to 96 substitution types
cgab-ncc/FIREVAT documentation built on Nov. 19, 2022, 5:55 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/firevat_mutational_patterns.R
| MutPatParseVCFObj | R Documentation |
MutPatParseVCFObj
Description
Parses a vcf.obj and prepares it to run Mutational Patterns.
Usage
MutPatParseVCFObj(vcf.obj, bsg, sample.id = "sample")
Arguments
vcf.obj |
A list from ReadVCF |
bsg |
A BSgenome object |
sample.id |
A string value |
Value
A data.frame with the column sample.id and row names corresponding to 96 substitution types
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.