ParameterToBits: ParameterToBits

In cgab-ncc/FIREVAT: FIREVAT, FInding REliable Variants without ArTifacts

ParameterToBits

Description

Calculate the number of bits needed to conduct FIREVAT GA binary optimization.

Usage

ParameterToBits(vcf.obj, config.obj, vcf.filter, multiplier = 100)

Arguments

vcf.obj	A list from ReadVCF
config.obj	A list from ParseConfigFile
vcf.filter	A list from MakeMuTect2Filter
multiplier	A multiplier for convert fraction to integer (default = 100)

Details

vcf.obj$data: if max(vcf.obj$data[[param]]) < 1, then multiply multiplier to the vector

Value

A list with the elements

• params.bit.lenA numeric vector. Each element is the bit length of each parameter value

• vcf.objA vcf.obj (ReadVCF) with updated data

cgab-ncc/FIREVAT documentation built on Nov. 19, 2022, 5:55 p.m.