PerformStrandBiasAnalysis: PerformStrandBiasAnalysis

In cgab-ncc/FIREVAT: FIREVAT, FInding REliable Variants without ArTifacts

PerformStrandBiasAnalysis

Description

Performs strand bias analysis

Usage

PerformStrandBiasAnalysis(
  vcf.obj,
  ref.forward.strand.var,
  ref.reverse.strand.var,
  alt.forward.strand.var,
  alt.reverse.strand.var,
  perform.fdr.correction = TRUE,
  fdr.correction.method = "BH"
)

Arguments

vcf.obj	ReadVCF
ref.forward.strand.var	A string value.
ref.reverse.strand.var	A string value.
alt.forward.strand.var	A string value.
alt.reverse.strand.var	A string value.
perform.fdr.correction	If TRUE, then performs false discovery rate correction
fdr.correction.method	A string value. FDR correction method (Refer to p.adjust() function)

Value

An updated vcf.obj

cgab-ncc/FIREVAT documentation built on Nov. 19, 2022, 5:55 p.m.