PlotTriNucSpectrum: PlotTriNucSpectrum

In cgab-ncc/FIREVAT: FIREVAT, FInding REliable Variants without ArTifacts

PlotTriNucSpectrum

Description

Plots the spectrum of 96 trinucleotide distribution (C>A, C>G, C>T, T>A, T>C, T>G) Please note that this function assumes that both sub.types and spectrum are sorted in the following order: C>A, C>G, C>T, T>A, T>C, T>G

Usage

PlotTriNucSpectrum(
  sub.types,
  spectrum,
  max.y.val,
  min.y.val,
  y.axis.title,
  draw.top.strip = T,
  draw.x.axis.labels = T,
  draw.y.axis.labels = T,
  draw.y.axis.title = T,
  font.size.small = 8,
  font.size.med = 14,
  plot.margin.top = 0.5,
  plot.margin.bottom = 0.5,
  plot.margin.left = 0.5,
  plot.margin.right = 0.5,
  title
)

Arguments

sub.types	A character vector (types of 96 trinucleotide substitutions)
spectrum	A numeric vector (96 elements)
max.y.val	y axis maximum value
min.y.val	y axis minimum value
y.axis.title	y axis title
draw.top.strip	If True then draws top strip; Default = T
draw.x.axis.labels	If True then draws x axis labels; Default = T
draw.y.axis.labels	If True then draws y axis labels; Default = T
draw.y.axis.title	If True then draws y axis title; Default = T
font.size.small	Small font size; Default = 8
font.size.med	Medium font size; Default = 14
plot.margin.top	Top margin; Default = 0.5
plot.margin.bottom	Bottom margin; Default = 0.5
plot.margin.left	Left margin; Default = 0.5
plot.margin.right	Right margin; Default = 0.5
title	Plot title

Value

A ggplot object

cgab-ncc/FIREVAT documentation built on Nov. 19, 2022, 5:55 p.m.