QueryAnnotatedVCF: FilterAnnotatedVCF
In cgab-ncc/FIREVAT: FIREVAT, FInding REliable Variants without ArTifacts
View source: R/firevat_annotation.R
QueryAnnotatedVCF R Documentation
FilterAnnotatedVCF
Description
Annotates a vcf.obj using df.variants.of.interest (from (PrepareAnnotationDB)
Usage
QueryAnnotatedVCF(
vcf.obj.annotated,
filter.key.value.pairs,
filter.condition = "AND"
)
Arguments
vcf.obj.annotated
AnnotateVCFObj
filter.key.value.pairs
A list with the key as the column name and value as the
filtering values. E.g. list("CLNSIG" = c("Pathogenic", "Pathogenic/Likely_pathogenic"))
filter.condition
'AND' or 'OR'.
Value
A vcf.obj
cgab-ncc/FIREVAT documentation built on Nov. 19, 2022, 5:55 p.m.
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View source: R/firevat_annotation.R
| QueryAnnotatedVCF | R Documentation |
FilterAnnotatedVCF
Description
Annotates a vcf.obj using df.variants.of.interest (from (PrepareAnnotationDB)
Usage
QueryAnnotatedVCF( vcf.obj.annotated, filter.key.value.pairs, filter.condition = "AND" )
Arguments
vcf.obj.annotated |
|
filter.key.value.pairs |
A list with the key as the column name and value as the filtering values. E.g. list("CLNSIG" = c("Pathogenic", "Pathogenic/Likely_pathogenic")) |
filter.condition |
'AND' or 'OR'. |
Value
A vcf.obj
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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