API for cgmisc-team/cgmisc
Various functions useful in computational genetics, e.g. in GWAS
| Global functions | |
|---|---|
| .onAttach | Source code |
| PHASE.to.FASTA | Man page |
| PHASE.to.Haploview | Man page |
| PHASE2FASTA | Man page |
| PHASE2Haploview | Man page |
| bigRR.data | Man page |
| bigRR.data-class | Man page |
| boxplot.snp | Man page Source code |
| boxplot.snp.twoWay | Man page Source code |
| cgmisc | Man page |
| cgmisc-package | Man page |
| choose.top.snps | Man page Source code |
| chr.x.fix.canfam | Man page Source code |
| clump.markers | Man page Source code |
| compute.Fstats | Man page |
| compute.fstats | Man page Source code |
| create.Haploview.info | Man page |
| create.haploview.info | Man page Source code |
| epistasis.scan | Man page Source code |
| fstats.result | Man page |
| fstats.result-class | Man page |
| get.LD.colors | Man page |
| get.adjacent.markers | Man page Source code |
| get.chr.midpoints | Man page Source code |
| get.erv | Man page Source code |
| get.ld.colors | Man page Source code |
| get.overlap.windows | Man page Source code |
| get.roh | Man page |
| gwaa.to.PHASE | Man page |
| gwaa.to.bed | Man page Source code |
| gwaa.to.bigRR | Man page |
| gwaa.to.bigrr | Man page Source code |
| gwaa.to.phase | Man page Source code |
| gwaa.to.vGWAS | Man page |
| gwaa.to.vgwas | Man page Source code |
| gwaa2PHASE | Man page |
| gwaa2bed | Man page |
| gwaa2bigRR | Man page |
| gwaa2bigrr | Man page |
| gwaa2phase | Man page |
| gwaa2vGWAS | Man page |
| gwaa2vgwas | Man page |
| het.overlap.wind | Man page |
| open.region.UCSC | Man page |
| open.region.ucsc | Man page Source code |
| pac.result | Man page |
| pac.result-class | Man page |
| phase.to.fasta | Man page Source code |
| phase.to.haploview | Man page Source code |
| phase2fasta | Man page |
| phase2haploview | Man page |
| plot.Fst | Man page |
| plot.LD.decay | Man page |
| plot.clumps | Man page Source code |
| plot.erv | Man page Source code |
| plot.fstats | Man page Source code |
| plot.genes | Man page Source code |
| plot.ld.decay | Man page Source code |
| plot.manhattan.LD | Man page |
| plot.manhattan.genes | Man page Source code |
| plot.manhattan.ld | Man page Source code |
| plot.overlap | Man page Source code |
| plot.pac | Man page Source code |
| plot.qq | Man page Source code |
| pop.allele.counts | Man page Source code |
