phase.to.fasta: Converts haplotypes from PHASE output to FASTA format.

In cgmisc-team/cgmisc: Various functions useful in computational genetics, e.g. in GWAS

Converts haplotypes from PHASE output to FASTA format.

Description

Returns a FASTA file with all PHASE-derived haplotypes.

Usage

phase.to.fasta(input, output = NULL, filter = NULL)

Arguments

input	output from PHASE (.out file),
output	output filename (optional).

Author(s)

Marcin Kierczak [e-mail]

Examples

## Not run: 
 con <- "~/Research/Behavior/results/2014-02-11_mh_aggr_chr36.phase.out"
 phase2fasta(input=con)

## End(Not run)

cgmisc-team/cgmisc documentation built on Jan. 3, 2024, 9:52 p.m.