get.ld.colors: Plot results of 'get.LD.colors'

In cgmisc-team/cgmisc: Various functions useful in computational genetics, e.g. in GWAS

Plot results of get.LD.colors

Description

Returns colour scale based on LD to a chosen index marker.

Usage

get.ld.colors(data, chr, index.snp, region = NULL)

Arguments

data	an object of the gwaa.data-class
chr	number of chromosome of interest
index.snp	numeric index of the index marker
region	a region for which to obtain LD colors
wes.par	parameters for package wesanderson

Value

a list with four vectors: 1) LD-based colors, 2) pch values, 3) color scale and 4) breakpoints.

Author(s)

Marcin Kierczak <[e-mail]>

See Also

plot.pac

Examples

## Not run: get.LD.colors(data, chr = 38, index.snp=270)
 
## End(Not run)

cgmisc-team/cgmisc documentation built on Jan. 3, 2024, 9:52 p.m.