get.overlap.windows: Get overlapping windows

In cgmisc-team/cgmisc: Various functions useful in computational genetics, e.g. in GWAS

Get overlapping windows

Description

Divides chromosome into a number of overlapping windows. Windows and overlap size is defined in terms of a fixed number of base pairs. One may use returned windows for further analyses.

Usage

get.overlap.windows(data, chr, size = 1250000, overlap = 2500)

Arguments

data	data object in gwaa.data-class,
chr	chromosome to be divided into windows - if not specified, the entire genome is taken into consideration,
size	size of the window,
overlap	size of the overlap.

Value

List containing windows coordinates and LW matrix with windows and markers.

Author(s)

Marcin Kierczak <[e-mail]>

See Also

het.overlap.wind

cgmisc-team/cgmisc documentation built on Jan. 3, 2024, 9:52 p.m.