Files in cgmisc-team/cgmisc
Various functions useful in computational genetics, e.g. in GWAS
.DS_Store
.Rbuildignore
.Rprofile
.github/workflows/R-CMD-check.yaml
.github/workflows/main.yml
.gitignore
DESCRIPTION
Dockerfile
Dockerfile.old
NAMESPACE
R/.Rapp.history
R/.Rhistory
R/bigRR.data.r
R/boxplot.snp.R
R/boxplot.snp.twoWay.R
R/choose.top.snps.R
R/chr.x.fix.canfam.r
R/clump.markers.r
R/compute.Fstats.r
R/create.Haploview.info.r
R/epistasis.scan.R
R/fstats.result.r
R/get.LD.colors.r
R/get.adjacent.markers.r
R/get.chr.midpoints.r
R/get.erv.R
R/get.overlap.windows.r
R/get.roh.R
R/gwaa.to.bed.r
R/gwaa.to.bigrr.r
R/gwaa.to.phase.r
R/gwaa.to.vgwas.r
R/het.overlap.wind.R
R/open.region.UCSC.R
R/pac.result.r
R/phase.to.fasta.r
R/phase.to.haploview.r
R/plot.LD.decay.r
R/plot.clumps.r
R/plot.erv.r
R/plot.fstats.r
R/plot.genes.R
R/plot.manhattan.LD.r
R/plot.manhattan.genes.r
R/plot.overlap.R
R/plot.pac.r
R/plot.qq.r
R/pop.allele.counts.r
R/zzz.R
README.md
assets/cgmisc_logo_small.png
assets/cgmisc_logo_small.tiff
cgmisc_2.9.10.tar.gz
cgmisc_2.9.11.tar.gz
cgmisc_2.9.11.tgz
data/cgmisc_data.rda
dev/.Rapp.history
dev/.Rhistory
dev/__plot.qq.r
dev/dev_get.overlapping.windows.r
dev/dev_get.window.means.r
dev/dev_gwaa2bedLD.R
dev/dev_haploplot.r
dev/dev_plot.genes.r
dev/dev_roh.r
dev/dev_windows.r
dev/haploplot_devel.r
inst/extdata/canFam3.1.prot.bed
inst/extdata/canFam3cgmisc.db
man/bigRR.data.Rd
man/boxplot.snp.Rd
man/boxplot.snp.twoWay.Rd
man/cgmisc.Rd
man/choose.top.snps.Rd
man/chr.x.fix.canfam.Rd
man/clump.markers.Rd
man/compute.fstats.Rd
man/create.haploview.info.Rd
man/epistasis.scan.Rd
man/fstats.result.Rd
man/get.adjacent.markers.Rd
man/get.chr.midpoints.Rd
man/get.erv.Rd
man/get.ld.colors.Rd
man/get.overlap.windows.Rd
man/get.roh.Rd
man/gwaa.to.bed.Rd
man/gwaa.to.bigrr.Rd
man/gwaa.to.phase.Rd
man/gwaa.to.vgwas.Rd
man/het.overlap.wind.Rd
man/open.region.ucsc.Rd
man/pac.result.Rd
man/phase.to.fasta.Rd
man/phase.to.haploview.Rd
man/plot.clumps.Rd
man/plot.erv.Rd
man/plot.fstats.Rd
man/plot.genes.Rd
man/plot.ld.decay.Rd
man/plot.manhattan.genes.Rd
man/plot.manhattan.ld.Rd
man/plot.overlap.Rd
man/plot.pac.Rd
man/plot.qq.Rd
man/pop.allele.counts.Rd
renv.lock
renv/.gitignore
renv/activate.R
renv/settings.dcf
tests/.DS_Store
tests/testthat.R
tests/testthat/LW.windows.rds
tests/testthat/Rplots.pdf
tests/testthat/clumps.rds
tests/testthat/data.qc1.rds
tests/testthat/fst.rds
tests/testthat/mm.rds
tests/testthat/pac.rds
tests/testthat/plot_pac.png
tests/testthat/plot_qq.png
tests/testthat/pop.rds
tests/testthat/roh1.rds
tests/testthat/roh2.rds
tests/testthat/test_loading_data.R
tests/testthat/test_pac.R
vignettes/.gitignore
vignettes/vignette.Rmd
vignettes/vignette.bib
vignettes/vignette.pdf
