boxplot.snp: Box plot with genotypes
In cgmisc-team/cgmisc: Various functions useful in computational genetics, e.g. in GWAS
boxplot.snp R Documentation
Box plot with genotypes
Description
Makes boxplots of the individuals in every genotypic class, based on a SNP.
Works for both outbreed (three boxes) and inbreed (two boxes) data.
Usage
boxplot.snp(data, marker, trait, recode = F, ...)
Arguments
marker
SNP name or index
trait
trait name
recode
if genotypes are to be recoded to 'AA','Aa','aa'.
GWASdata
a gwaa.data class object as used by gwaa.data-class
Value
null
Author(s)
Simon Forsberg <simon.forsberg@slu.se>
cgmisc-team/cgmisc documentation built on Jan. 3, 2024, 9:52 p.m.
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| boxplot.snp | R Documentation |
Box plot with genotypes
Description
Makes boxplots of the individuals in every genotypic class, based on a SNP. Works for both outbreed (three boxes) and inbreed (two boxes) data.
Usage
boxplot.snp(data, marker, trait, recode = F, ...)
Arguments
marker |
SNP name or index |
trait |
trait name |
recode |
if genotypes are to be recoded to 'AA','Aa','aa'. |
GWASdata |
a gwaa.data class object as used by |
Value
null
Author(s)
Simon Forsberg <simon.forsberg@slu.se>
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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