plot.clumps: Plot marker clumps on Manhattan plot.
In cgmisc-team/cgmisc: Various functions useful in computational genetics, e.g. in GWAS
plot.clumps R Documentation
Plot marker clumps on Manhattan plot.
Description
Plot clumps resulting from running the clump.markers function.
Usage
plot.clumps(gwas.result, clumps, chr, region, clambda = F)
Arguments
gwas.result
an object of the gwaa.data-class,
clumps
a result of running the clump.markers function,
chr
chromosome to display,
region
a vector of start and stop coordinates of a region to display,
clambda
a logical indicating whether corrected Pc1df p-values are
to be used.
Author(s)
Marcin Kierczak <Marcin.Kierczak@imbim.uu.se>
See Also
clump.markers
Examples
## Not run: plot.clumps(data, myclumps, 1, c(14172, 19239))
cgmisc-team/cgmisc documentation built on Jan. 3, 2024, 9:52 p.m.
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| plot.clumps | R Documentation |
Plot marker clumps on Manhattan plot.
Description
Plot clumps resulting from running the clump.markers function.
Usage
plot.clumps(gwas.result, clumps, chr, region, clambda = F)
Arguments
gwas.result |
an object of the |
clumps |
a result of running the |
chr |
chromosome to display, |
region |
a vector of start and stop coordinates of a region to display, |
clambda |
a logical indicating whether corrected Pc1df p-values are to be used. |
Author(s)
Marcin Kierczak <Marcin.Kierczak@imbim.uu.se>
See Also
clump.markers
Examples
## Not run: plot.clumps(data, myclumps, 1, c(14172, 19239))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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