Files in charles-plessy/smallCAGEqc
ad-hoc QC functions for shallow-sequenced test CAGE libraries
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS
R/CAGEscanMolecule.R
R/TPM.R
R/VennAB.R
R/bedFieldNames.R
R/chrFreqs.R
R/countSymbols.R
R/erccSpikeConcentration.R
R/exportInEnv.R
R/fldgmArrayQC.R
R/fldgmChamberWell.R
R/fldgmConcentrationPlot.R
R/fldgmPicoGreen.R
R/fldgmPicoGreenStdCurve.R
R/hanabiPlot.R
R/hannot.R
R/hierarchAnnot.R
R/is.singleton.R
R/listSymbols.R
R/llPostProcess.R
R/loadBED12.R
R/loadLogs.R
R/loadMoiraiStats.R
R/mapStats.R
R/nanoCAGE2017barcodes.R
R/plate96.R
R/plotAnnot.R
R/plotNameColor.R
R/plotSlimSmear.R
R/ranges2.R
R/setBlock.R
R/setupForMoirai.R
R/smallCAGEqc.R
README.md
TODO
data/nanoCAGE2017barcodes.R
inst/extdata/BED12_A.bed
inst/extdata/BED12_B.bed
inst/extdata/BED12_C.bed
inst/extdata/libs-with-all-metadata.tsv
inst/extdata/libs.csv
inst/extdata/samplename_to_sampleid.txt
inst/extdata/summary.txt
inst/rmarkdown/templates/cDNA_yields/skeleton/cDNA_yields.Rmd
inst/rmarkdown/templates/cDNA_yields/template.yaml
inst/rmarkdown/templates/nanoCAGE/skeleton/skeleton.Rmd
inst/rmarkdown/templates/nanoCAGE/template.yaml
man/TPM.Rd
man/VennAB.Rd
man/bedFieldNames.Rd
man/chrFreqs.Rd
man/countSymbols.Rd
man/erccSpikeConcentration.Rd
man/exportInEnv.Rd
man/fldgmArrayQC.Rd
man/fldgmChamberWell.Rd
man/fldgmConcentrationPlot.Rd
man/fldgmPicoGreen.Rd
man/fldgmPicoGreenStdCurve.Rd
man/hanabi.Rd
man/hanabiPlot.Rd
man/hannot.Rd
man/hierarchAnnot.Rd
man/is.singleton.Rd
man/listSymbols.Rd
man/llPostProcess.Rd
man/loadBED12.Rd
man/loadLogs.Rd
man/loadMoiraiStats.Rd
man/mapStats.Rd
man/nanoCAGE2017barcodes.Rd
man/plate96.Rd
man/plot.hanabi.Rd
man/plotAnnot.Rd
man/plotNameColor.Rd
man/plotSlimSmear.Rd
man/points.hanabi.Rd
man/ranges2annot.Rd
man/ranges2genes.Rd
man/setBlock.Rd
man/setupForMoirai.Rd
man/smallCAGEqc.Rd
smallCAGEqc.Rproj
vignettes/plotAnnot.R
vignettes/plotAnnot.Rmd
vignettes/plotAnnot.html
vignettes/plotAnnot.md
vignettes/plotAnnot_files/figure-html/all-1.png
vignettes/plotAnnot_files/figure-html/annotation-1.png
vignettes/plotAnnot_files/figure-html/counts-1.png
vignettes/plotAnnot_files/figure-html/mapped-1.png
vignettes/plotAnnot_files/figure-html/qc-1.png
vignettes/plotAnnot_files/figure-html/steps-1.png
