deseqObjectWithProtocolSpecificSizeFactors: create deseq object with protocol specific size factors

In cmatKhan/brentlabRnaSeqTools: A Collection of Functions to Interact with the Brentlab RNASeq Database

Description

create deseq object with protocol specific size factors

Usage

deseqObjectWithProtocolSpecificSizeFactors(passing_qc1_meta_qual, raw_counts)

Arguments

passing_qc1_meta_qual	can be any metadata df, but if you're going to run deseq you may want to filter it for passing samples first
raw_counts	a dataframe of raw counts with genes in the rows and samples in the columns. sample names must be the same as the fastqFileName column in passing_qc1_meta_qual.

Value

a deseq data object with size factors calculated within the library protocol groups

cmatKhan/brentlabRnaSeqTools documentation built on Nov. 17, 2021, 5:47 a.m.