fltrLowReplicateParams: filter low replicate parameters from metadata

In cmatKhan/brentlabRnaSeqTools: A Collection of Functions to Interact with the Brentlab RNASeq Database

Description

given a model formula, remove samples with less than a specified number of replicates from the metadata

Usage

fltrLowReplicateParams(metadata_df, design_formula, replicate_threshold = 2)

Arguments

metadata_df	a data frame that contains at least the model paramters of interest
design_formula	an R formula, eg ~libraryDate+treatment, of parameters contained in the metadata_df
replicate_threshold	the number of replicates below which samples will be removed. Default is 2

Value

the input metadata with samples in replicate groups with less than the specified thershold filtered out

cmatKhan/brentlabRnaSeqTools documentation built on Nov. 17, 2021, 5:47 a.m.