examineSingleGroupWithLibDateSizeFactors: temporary function to examine only PBS samples, eg

Description Usage Arguments Value

View source: R/DeseqFunctions.R

Description

gets all samples in qc_passing_metadata with size_factor_subset_param same as samples in row_filter

Usage

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examineSingleGroupWithLibDateSizeFactors(
  qc1_passing_metadata,
  raw_counts,
  row_filter,
  size_factor_subset_param
)

Arguments

qc1_passing_metadata

metadata passing auto/manual flags

raw_counts

must include at least the sames in the metadata

row_filter

is a boolean vector, eg qc1_passing_env_pert_meta_qual$MEDIUM == "PBS"

size_factor_subset_param

eg LIBRARYDATE – the column to group the samples for size factor calculation

Value

a list with slots metadata, raw_counts, size_factors


cmatKhan/brentlabRnaSeqTools documentation built on Nov. 17, 2021, 5:47 a.m.