Description Usage Arguments Value
View source: R/DeseqFunctions.R
gets all samples in qc_passing_metadata with size_factor_subset_param same as samples in row_filter
1 2 3 4 5 6 | examineSingleGroupWithLibDateSizeFactors(
qc1_passing_metadata,
raw_counts,
row_filter,
size_factor_subset_param
)
|
qc1_passing_metadata |
metadata passing auto/manual flags |
raw_counts |
must include at least the sames in the metadata |
row_filter |
is a boolean vector, eg qc1_passing_env_pert_meta_qual$MEDIUM == "PBS" |
size_factor_subset_param |
eg LIBRARYDATE – the column to group the samples for size factor calculation |
a list with slots metadata, raw_counts, size_factors
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