examineSingleGroupWithLibDateSizeFactors: temporary function to examine only PBS samples, eg
In cmatKhan/brentlabRnaSeqTools: A Collection of Functions to Interact with the Brentlab RNASeq Database
Description
Usage
Arguments
Value
View source: R/DeseqFunctions.R
Description
gets all samples in qc_passing_metadata with size_factor_subset_param same as samples in row_filter
Usage
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examineSingleGroupWithLibDateSizeFactors(
qc1_passing_metadata,
raw_counts,
row_filter,
size_factor_subset_param
)
Arguments
qc1_passing_metadata
metadata passing auto/manual flags
raw_counts
must include at least the sames in the metadata
row_filter
is a boolean vector, eg qc1_passing_env_pert_meta_qual$MEDIUM == "PBS"
size_factor_subset_param
eg LIBRARYDATE – the column to group the samples for size factor calculation
Value
a list with slots metadata, raw_counts, size_factors
cmatKhan/brentlabRnaSeqTools documentation built on Nov. 17, 2021, 5:47 a.m.
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Description Usage Arguments Value
View source: R/DeseqFunctions.R
Description
gets all samples in qc_passing_metadata with size_factor_subset_param same as samples in row_filter
Usage
1 2 3 4 5 6 | examineSingleGroupWithLibDateSizeFactors(
qc1_passing_metadata,
raw_counts,
row_filter,
size_factor_subset_param
)
|
Arguments
qc1_passing_metadata |
metadata passing auto/manual flags |
raw_counts |
must include at least the sames in the metadata |
row_filter |
is a boolean vector, eg qc1_passing_env_pert_meta_qual$MEDIUM == "PBS" |
size_factor_subset_param |
eg LIBRARYDATE – the column to group the samples for size factor calculation |
Value
a list with slots metadata, raw_counts, size_factors
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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